The Microarray Core Facility offers Gene Expression Profiling, SNP, miRNA, and CNV analysis using Affymetrix microarray technologies.
The Core specializes in handling and processing RNA extracted from Formalin-Fixed Parafin embedded tissue (FFPE).
Contact Us with questions or to discuss your project
Location – "Fish Room" near 3rd floor elevator lobby of the Smith Building. Next to the multicolored fish sculpture.
Entry –
If you are a DFCI employee, use your DFCI ID card to enter the room.
If you are not a DFCI employee, first obtain a Visitor Pass at the Security Desk in the Smith Building lobby, then dial 2-3131 on the red phone near SM300, and ask for SM300 to be unlocked.
Hours | Location |
Monday-Friday |
21-27 Burlington Ave. 4th floor |
Purchase Orders are to be made out to:
Dana Farber Cancer Institute
General Accounting, BP-425
450 Brookline Avenue
Boston, MA 02215-5450
Note to Partners, Harvard, Boston Children’s and Tufts researchers:
If you are using a PO from an institution other than one under which you signed in, you must stop and contact the DFCI iLab staff at sc_billing@dfci.harvard.edu
http://macf-web.dfci.harvard.edu/
Name | Role | Phone | Location | |
---|---|---|---|---|
Zach Herbert |
Associate Director Genomics Core Facility
|
617-632-3082
|
zherbert@mail.dfci.harvard.edu
|
|
Maura Berkeley |
Lab Supervisor
|
maura_berkeley@dfci.harvard.edu
|
||
Paul Morrison |
Director
|
617-632-3082
|
paul_morrison@dfci.harvard.edu
|
Fixed Cost Services |
► 3' Array Low Input (9) | |||
Name | Description | Price | |
---|---|---|---|
Drosophila Genome 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Human Genome U133A 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Human Genome U133Plus 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Mouse Genome 430 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Mouse Genome 430A 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet |
Inquire | |
PrimeView |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Rat Genome 230 2.0 |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
Yeast Genome 2.0 |
Sample Preparation:NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) |
Inquire | |
Zebrafish Genome |
Sample Preparation: NuGEN Ovation V2 Sample Requirement: 5ng-30ng (minimum requires very high quality RNA) More information: Datasheet
|
Inquire | |
► 3' Arrays (9) | |||
Name | Description | Price | |
Drosophila Genome 2.0 |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet |
Inquire | |
Human Genome U133A 2.0 |
More information: Datasheet
|
Inquire | |
Human Genome U133Plus 2.0 |
More information: Datasheet
|
Inquire | |
Mouse Genome 430 2.0 |
More information: Datasheet |
Inquire | |
Mouse Genome 430A 2.0 |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet |
Inquire | |
PrimeView |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet
|
Inquire | |
Rat Genome 230 2.0 |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet
|
Inquire | |
Yeast Genome 2.0 |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet
|
Inquire | |
Zebrafish Genome |
Sample requirement: 300ng (100ng minimum)
More information: Datasheet
|
Inquire | |
► FFPE Whole Transcript - Affymetrix SensationPlus (7) | |||
Name | Description | Price | |
Human Exon 1.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Human Gene 1.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Human Gene 2.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Human Transcriptome Array (HTA) 2.0 |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Mouse Exon 1.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Mouse Gene 1.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
Mouse Gene 2.0 ST |
Sample requirement: less than 50ng FFPE total RNA
|
Inquire | |
► FFPE Whole Transcript - NuGEN (9) | |||
Name | Description | Price | |
Human Exon 1.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Human Gene 1.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Human Gene 2.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Human Transcriptome Array (HTA) 2.0 |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Mouse Exon 1.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Mouse Gene 1.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Mouse Gene 2.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Rat Gene 1.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
Rat Gene 2.0 ST |
Sample requirement: 50 - 100ng FFPE total RNA
|
Inquire | |
► Other (1) | |||
Name | Description | Price | |
Custom processing | Inquire | ||
► QC only (4) | |||
Name | Description | Price | |
DNA - Bioanalyzer 12000 |
x ng/uL, submit 5 uL |
Inquire | |
DNA Bioanalyzer - High Sensitivity |
x ng/uL, submit 5 uL |
Inquire | |
RNA - Bioanalyzer Nano |
x ng/uL, submit 5 uL |
Inquire | |
RNA - Bioanalyzer Pico |
x ng/uL, submit 5 uL
|
Inquire | |
► SNP Arrays (4) | |||
Name | Description | Price | |
Genome-Wide Human SNP 6.0 |
Sample requirement: 600ng* genomic DNA supplied at 50ng/uL
(*minimum 500ng supplied at 50ng/uL)
|
Inquire | |
Human Cytoscan HD |
Sample requirement: 400ng* genomic DNA supplied at 50ng/uL
(*minimum 250ng supplied at 50ng/uL)
More information: Datasheet |
Inquire | |
Human Mapping 250K - Nsp |
Sample requirement: 400ng* genomic DNA supplied at 50ng/uL
(*minimum 250ng supplied at 50ng/uL)
More information: Datasheet
|
Inquire | |
Mouse Diversity Genotyping |
Sample requirement: 600ng* genomic DNA supplied at 50ng/uL
(*minimum 500ng supplied at 50ng/uL)
More Information: Datasheet |
Inquire | |
► Whole Transcript Arrays (11) | |||
Name | Description | Price | |
Human Exon 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Human Gene 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet |
Inquire | |
Human Gene 2.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Human Transcriptome Array (HTA) 2.0 |
Sample requirement: 300ng (minimum 100ng)
More information:Datasheet
|
Inquire | |
Mouse Exon 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
|
Inquire | |
Mouse Gene 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Mouse Gene 2.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Mouse Transcriptome Array | Inquire | ||
Rat Gene 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Rat Gene 2.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
Zebrafish Gene 1.0 ST |
Sample requirement: 300ng (minimum 100ng)
More information: Datasheet
|
Inquire | |
► Whole Transcript Arrays - Low Input (9) | |||
Name | Description | Price | |
Human Exon 1.0 ST |
Affy Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Human Gene 1.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Human Gene 2.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet
|
Inquire | |
Human Transcriptome Array (HTA) 2.0 |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Mouse Exon 1.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Mouse Gene 1.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Mouse Gene 2.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More Information: Datasheet |
Inquire | |
Rat Gene 1.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More information: Datasheet |
Inquire | |
Rat Gene 2.0 ST |
NuGEN Pico WTA
Sample Requirement: Less than 50ng total RNA
More information: Datasheet |
Inquire | |
► miRNA Array (1) | |||
Name | Description | Price | |
miRNA 4.0 Array | Inquire |
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